knitr::opts_chunk$set(
  warning = TRUE, # show warnings during codebook generation
  message = TRUE, # show messages during codebook generation
  error = TRUE, # do not interrupt codebook generation in case of errors,
                # usually better for debugging
  echo = TRUE  # show R code
)
ggplot2::theme_set(ggplot2::theme_bw())
pander::panderOptions("table.split.table", Inf)

We collected the following data.

# omit the following lines, if your missing values are already properly labelled
codebook_data <- detect_missing(codebook_data,
    only_labelled = TRUE, # only labelled values are autodetected as
                                   # missing
    negative_values_are_missing = FALSE, # negative values are missing values
    ninety_nine_problems = TRUE,   # 99/999 are missing values, if they
                                   # are more than 5 MAD from the median
    )

# If you are not using formr, the codebook package needs to guess which items
# form a scale. The following line finds item aggregates with names like this:
# scale = scale_1 + scale_2R + scale_3R
# identifying these aggregates allows the codebook function to
# automatically compute reliabilities.
# However, it will not reverse items automatically.
codebook_data <- detect_scales(codebook_data)


# Does your dataset have a name that is not reflected in the file name?
# Uncomment the line below and change the name
# metadata(codebook_data)$name <- "My Awesome Dataset"

codebook(codebook_data)
## No missing values.
knitr::asis_output(data_info)

Metadata

Description

if (exists("name", meta)) {
  glue::glue(
    "__Dataset name__: {name}",
    .envir = meta)
}

Dataset name: codebook_data

cat(description)

The dataset has N=180 rows and 68 columns. 180 rows have no missing values on any column.

Metadata for search engines

  • Date published: 2020-08-19
meta <- meta[setdiff(names(meta),
                     c("creator", "datePublished", "identifier",
                       "url", "citation", "spatialCoverage", 
                       "temporalCoverage", "description", "name"))]
pander::pander(meta)
  • keywords: “subject”, “activity”, “timeBodyAccelerometer-mean()-X”, “timeBodyAccelerometer-mean()-Y”, “timeBodyAccelerometer-mean()-Z”, “timeBodyAccelerometer-std()-X”, “timeBodyAccelerometer-std()-Y”, “timeBodyAccelerometer-std()-Z”, “timeGravityAccelerometer-mean()-X”, “timeGravityAccelerometer-mean()-Y”, “timeGravityAccelerometer-mean()-Z”, “timeGravityAccelerometer-std()-X”, “timeGravityAccelerometer-std()-Y”, “timeGravityAccelerometer-std()-Z”, “timeBodyAccelerometerJerk-mean()-X”, “timeBodyAccelerometerJerk-mean()-Y”, “timeBodyAccelerometerJerk-mean()-Z”, “timeBodyAccelerometerJerk-std()-X”, “timeBodyAccelerometerJerk-std()-Y”, “timeBodyAccelerometerJerk-std()-Z”, “timeBodyGyroscope-mean()-X”, “timeBodyGyroscope-mean()-Y”, “timeBodyGyroscope-mean()-Z”, “timeBodyGyroscope-std()-X”], “timeBodyGyroscope-std()-Y”, “timeBodyGyroscope-std()-Z”, “timeBodyGyroscopeJerk-mean()-X”, “timeBodyGyroscopeJerk-mean()-Y”, “timeBodyGyroscopeJerk-mean()-Z”, “timeBodyGyroscopeJerk-std()-X”, “timeBodyGyroscopeJerk-std()-Y”, “timeBodyGyroscopeJerk-std()-Z”, “timeBodyAccelerometerMagnitude-mean()”, “timeBodyAccelerometerMagnitude-std()”, “timeGravityAccelerometerMagnitude-mean()”, “timeGravityAccelerometerMagnitude-std()”, “timeBodyAccelerometerJerkMagnitude-mean()”, “timeBodyAccelerometerJerkMagnitude-std()”, “timeBodyGyroscopeMagnitude-mean()”, “timeBodyGyroscopeMagnitude-std()”, “timeBodyGyroscopeJerkMagnitude-mean()”, “timeBodyGyroscopeJerkMagnitude-std()”, “frequencyBodyAccelerometer-mean()-X”, “frequencyBodyAccelerometer-mean()-Y”, “frequencyBodyAccelerometer-mean()-Z”, “frequencyBodyAccelerometer-std()-X”, “frequencyBodyAccelerometer-std()-Y”, “frequencyBodyAccelerometer-std()-Z”, “frequencyBodyAccelerometerJerk-mean()-X”, “frequencyBodyAccelerometerJerk-mean()-Y”, “frequencyBodyAccelerometerJerk-mean()-Z”, “frequencyBodyAccelerometerJerk-std()-X”, “frequencyBodyAccelerometerJerk-std()-Y”, “frequencyBodyAccelerometerJerk-std()-Z”, “frequencyBodyGyroscope-mean()-X”, “frequencyBodyGyroscope-mean()-Y”, “frequencyBodyGyroscope-mean()-Z”, “frequencyBodyGyroscope-std()-X”, “frequencyBodyGyroscope-std()-Y”, “frequencyBodyGyroscope-std()-Z”, “frequencyBodyAccelerometerMagnitude-mean()”, “frequencyBodyAccelerometerMagnitude-std()”, “frequencyBodyAccelerometerJerkMagnitude-mean()”, “frequencyBodyAccelerometerJerkMagnitude-std()”, “frequencyBodyGyroscopeMagnitude-mean()”, “frequencyBodyGyroscopeMagnitude-std()”, “frequencyBodyGyroscopeJerkMagnitude-mean()” and “frequencyBodyGyroscopeJerkMagnitude-std()”

knitr::asis_output(survey_overview)

Variables

if (detailed_variables || detailed_scales) {
  knitr::asis_output(paste0(scales_items, sep = "\n\n\n", collapse = "\n\n\n"))
}

“subject” {#subject .tabset}

Distribution {#_subject__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_subject__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“subject” integer 0 180 180 15.5 8.68 1 8 15.5 23 30 ▇▇▆▇▇▆▇▇
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“activity” {#activity .tabset}

Distribution {#_activity__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_activity__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n empty n_unique min max
“activity” character 0 180 180 0 6 8 20
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometer-mean()-X” {#_timeBodyAccelerometer_mean__X .tabset}

Distribution {#_timeBodyAccelerometer_mean___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometer_mean___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometer-mean()-X” numeric 0 180 180 0.27 0.012 0.22 0.27 0.28 0.28 0.3 ▁▁▁▁▂▇▂▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometer-mean()-Y” {#_timeBodyAccelerometer_mean__Y .tabset}

Distribution {#_timeBodyAccelerometer_mean___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometer_mean___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometer-mean()-Y” numeric 0 180 180 -0.018 0.0058 -0.041 -0.02 -0.017 -0.015 -0.0013 ▁▁▂▂▇▃▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometer-mean()-Z” {#_timeBodyAccelerometer_mean__Z .tabset}

Distribution {#_timeBodyAccelerometer_mean___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometer_mean___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometer-mean()-Z” numeric 0 180 180 -0.11 0.0096 -0.15 -0.11 -0.11 -0.1 -0.075 ▁▁▁▂▇▃▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometer-std()-X” {#_timeBodyAccelerometer_std__X .tabset}

Distribution {#_timeBodyAccelerometer_std___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometer_std___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometer-std()-X” numeric 0 180 180 -0.56 0.45 -1 -0.98 -0.75 -0.2 0.63 ▇▁▁▃▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometer-std()-Y” {#_timeBodyAccelerometer_std__Y .tabset}

Distribution {#_timeBodyAccelerometer_std___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometer_std___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometer-std()-Y” numeric 0 180 180 -0.46 0.5 -0.99 -0.94 -0.51 -0.031 0.62 ▇▁▁▁▃▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometer-std()-Z” {#_timeBodyAccelerometer_std__Z .tabset}

Distribution {#_timeBodyAccelerometer_std___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometer_std___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometer-std()-Z” numeric 0 180 180 -0.58 0.4 -0.99 -0.95 -0.65 -0.23 0.61 ▇▁▂▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeGravityAccelerometer-mean()-X” {#_timeGravityAccelerometer_mean__X .tabset}

Distribution {#_timeGravityAccelerometer_mean___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeGravityAccelerometer_mean___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeGravityAccelerometer-mean()-X” numeric 0 180 180 0.7 0.49 -0.68 0.84 0.92 0.94 0.97 ▁▁▁▁▁▁▁▇
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeGravityAccelerometer-mean()-Y” {#_timeGravityAccelerometer_mean__Y .tabset}

Distribution {#_timeGravityAccelerometer_mean___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeGravityAccelerometer_mean___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeGravityAccelerometer-mean()-Y” numeric 0 180 180 -0.016 0.35 -0.48 -0.23 -0.13 0.088 0.96 ▂▇▅▂▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeGravityAccelerometer-mean()-Z” {#_timeGravityAccelerometer_mean__Z .tabset}

Distribution {#_timeGravityAccelerometer_mean___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeGravityAccelerometer_mean___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeGravityAccelerometer-mean()-Z” numeric 0 180 180 0.074 0.29 -0.5 -0.12 0.024 0.15 0.96 ▁▅▇▆▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeGravityAccelerometer-std()-X” {#_timeGravityAccelerometer_std__X .tabset}

Distribution {#_timeGravityAccelerometer_std___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeGravityAccelerometer_std___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeGravityAccelerometer-std()-X” numeric 0 180 180 -0.96 0.025 -1 -0.98 -0.97 -0.95 -0.83 ▇▆▅▂▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeGravityAccelerometer-std()-Y” {#_timeGravityAccelerometer_std__Y .tabset}

Distribution {#_timeGravityAccelerometer_std___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeGravityAccelerometer_std___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeGravityAccelerometer-std()-Y” numeric 0 180 180 -0.95 0.033 -0.99 -0.97 -0.96 -0.94 -0.64 ▇▅▁▁▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeGravityAccelerometer-std()-Z” {#_timeGravityAccelerometer_std__Z .tabset}

Distribution {#_timeGravityAccelerometer_std___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeGravityAccelerometer_std___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeGravityAccelerometer-std()-Z” numeric 0 180 180 -0.94 0.04 -0.99 -0.96 -0.95 -0.92 -0.61 ▇▆▂▁▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerJerk-mean()-X” {#_timeBodyAccelerometerJerk_mean__X .tabset}

Distribution {#_timeBodyAccelerometerJerk_mean___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometerJerk_mean___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerJerk-mean()-X” numeric 0 180 180 0.079 0.013 0.043 0.074 0.076 0.083 0.13 ▁▁▇▇▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerJerk-mean()-Y” {#_timeBodyAccelerometerJerk_mean__Y .tabset}

Distribution {#_timeBodyAccelerometerJerk_mean___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometerJerk_mean___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerJerk-mean()-Y” numeric 0 180 180 0.0076 0.014 -0.039 0.00047 0.0095 0.013 0.057 ▁▁▂▆▇▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerJerk-mean()-Z” {#_timeBodyAccelerometerJerk_mean__Z .tabset}

Distribution {#_timeBodyAccelerometerJerk_mean___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometerJerk_mean___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerJerk-mean()-Z” numeric 0 180 180 -0.005 0.013 -0.067 -0.011 -0.0039 0.002 0.038 ▁▁▁▁▇▆▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerJerk-std()-X” {#_timeBodyAccelerometerJerk_std__X .tabset}

Distribution {#_timeBodyAccelerometerJerk_std___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometerJerk_std___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerJerk-std()-X” numeric 0 180 180 -0.59 0.42 -0.99 -0.98 -0.81 -0.22 0.54 ▇▁▁▂▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerJerk-std()-Y” {#_timeBodyAccelerometerJerk_std__Y .tabset}

Distribution {#_timeBodyAccelerometerJerk_std___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometerJerk_std___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerJerk-std()-Y” numeric 0 180 180 -0.57 0.43 -0.99 -0.97 -0.78 -0.15 0.36 ▇▁▁▂▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerJerk-std()-Z” {#_timeBodyAccelerometerJerk_std__Z .tabset}

Distribution {#_timeBodyAccelerometerJerk_std___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyAccelerometerJerk_std___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerJerk-std()-Z” numeric 0 180 180 -0.74 0.28 -0.99 -0.98 -0.88 -0.51 0.031 ▇▁▂▂▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscope-mean()-X” {#_timeBodyGyroscope_mean__X .tabset}

Distribution {#_timeBodyGyroscope_mean___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscope_mean___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscope-mean()-X” numeric 0 180 180 -0.032 0.054 -0.21 -0.047 -0.029 -0.017 0.19 ▁▁▂▇▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscope-mean()-Y” {#_timeBodyGyroscope_mean__Y .tabset}

Distribution {#_timeBodyGyroscope_mean___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscope_mean___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscope-mean()-Y” numeric 0 180 180 -0.074 0.036 -0.2 -0.09 -0.073 -0.061 0.027 ▁▁▁▃▇▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscope-mean()-Z” {#_timeBodyGyroscope_mean__Z .tabset}

Distribution {#_timeBodyGyroscope_mean___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscope_mean___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscope-mean()-Z” numeric 0 180 180 0.087 0.036 -0.072 0.075 0.085 0.1 0.18 ▁▁▁▁▇▇▂▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscope-std()-X”] {#_timeBodyGyroscope_std___X__ .tabset}

Distribution {#_timeBodyGyroscope_std___X___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscope_std___X___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscope-std()-X”] numeric 0 180 180 -0.69 0.29 -0.99 -0.97 -0.79 -0.44 0.27 ▇▁▂▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscope-std()-Y” {#_timeBodyGyroscope_std__Y .tabset}

Distribution {#_timeBodyGyroscope_std___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscope_std___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscope-std()-Y” numeric 0 180 180 -0.65 0.35 -0.99 -0.96 -0.8 -0.42 0.48 ▇▁▃▂▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscope-std()-Z” {#_timeBodyGyroscope_std__Z .tabset}

Distribution {#_timeBodyGyroscope_std___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscope_std___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscope-std()-Z” numeric 0 180 180 -0.62 0.37 -0.99 -0.96 -0.8 -0.31 0.56 ▇▁▂▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeJerk-mean()-X” {#_timeBodyGyroscopeJerk_mean__X .tabset}

Distribution {#_timeBodyGyroscopeJerk_mean___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscopeJerk_mean___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeJerk-mean()-X” numeric 0 180 180 -0.096 0.023 -0.16 -0.1 -0.099 -0.091 -0.022 ▁▁▁▇▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeJerk-mean()-Y” {#_timeBodyGyroscopeJerk_mean__Y .tabset}

Distribution {#_timeBodyGyroscopeJerk_mean___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscopeJerk_mean___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeJerk-mean()-Y” numeric 0 180 180 -0.043 0.0095 -0.077 -0.046 -0.041 -0.038 -0.013 ▁▁▁▂▇▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeJerk-mean()-Z” {#_timeBodyGyroscopeJerk_mean__Z .tabset}

Distribution {#_timeBodyGyroscopeJerk_mean___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscopeJerk_mean___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeJerk-mean()-Z” numeric 0 180 180 -0.055 0.012 -0.092 -0.062 -0.053 -0.049 -0.0069 ▁▁▃▇▃▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeJerk-std()-X” {#_timeBodyGyroscopeJerk_std__X .tabset}

Distribution {#_timeBodyGyroscopeJerk_std___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscopeJerk_std___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeJerk-std()-X” numeric 0 180 180 -0.7 0.3 -1 -0.98 -0.84 -0.46 0.18 ▇▁▂▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeJerk-std()-Y” {#_timeBodyGyroscopeJerk_std__Y .tabset}

Distribution {#_timeBodyGyroscopeJerk_std___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscopeJerk_std___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeJerk-std()-Y” numeric 0 180 180 -0.76 0.27 -1 -0.98 -0.89 -0.59 0.3 ▇▂▂▂▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeJerk-std()-Z” {#_timeBodyGyroscopeJerk_std__Z .tabset}

Distribution {#_timeBodyGyroscopeJerk_std___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_timeBodyGyroscopeJerk_std___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeJerk-std()-Z” numeric 0 180 180 -0.71 0.3 -1 -0.98 -0.86 -0.47 0.19 ▇▁▂▂▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerMagnitude-mean()” {#timeBodyAccelerometerMagnitude_mean__ .tabset}

Distribution {#timeBodyAccelerometerMagnitude_mean___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeBodyAccelerometerMagnitude_mean___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerMagnitude-mean()” numeric 0 180 180 -0.5 0.47 -0.99 -0.96 -0.48 -0.092 0.64 ▇▁▁▂▃▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerMagnitude-std()” {#timeBodyAccelerometerMagnitude_std__ .tabset}

Distribution {#timeBodyAccelerometerMagnitude_std___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeBodyAccelerometerMagnitude_std___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerMagnitude-std()” numeric 0 180 180 -0.54 0.43 -0.99 -0.94 -0.61 -0.21 0.43 ▇▁▁▂▂▁▂▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeGravityAccelerometerMagnitude-mean()” {#timeGravityAccelerometerMagnitude_mean__ .tabset}

Distribution {#timeGravityAccelerometerMagnitude_mean___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeGravityAccelerometerMagnitude_mean___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeGravityAccelerometerMagnitude-mean()” numeric 0 180 180 -0.5 0.47 -0.99 -0.96 -0.48 -0.092 0.64 ▇▁▁▂▃▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeGravityAccelerometerMagnitude-std()” {#timeGravityAccelerometerMagnitude_std__ .tabset}

Distribution {#timeGravityAccelerometerMagnitude_std___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeGravityAccelerometerMagnitude_std___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeGravityAccelerometerMagnitude-std()” numeric 0 180 180 -0.54 0.43 -0.99 -0.94 -0.61 -0.21 0.43 ▇▁▁▂▂▁▂▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerJerkMagnitude-mean()” {#timeBodyAccelerometerJerkMagnitude_mean__ .tabset}

Distribution {#timeBodyAccelerometerJerkMagnitude_mean___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeBodyAccelerometerJerkMagnitude_mean___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerJerkMagnitude-mean()” numeric 0 180 180 -0.61 0.4 -0.99 -0.98 -0.82 -0.25 0.43 ▇▁▁▂▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyAccelerometerJerkMagnitude-std()” {#timeBodyAccelerometerJerkMagnitude_std__ .tabset}

Distribution {#timeBodyAccelerometerJerkMagnitude_std___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeBodyAccelerometerJerkMagnitude_std___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyAccelerometerJerkMagnitude-std()” numeric 0 180 180 -0.58 0.42 -0.99 -0.98 -0.8 -0.22 0.45 ▇▁▁▂▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeMagnitude-mean()” {#timeBodyGyroscopeMagnitude_mean__ .tabset}

Distribution {#timeBodyGyroscopeMagnitude_mean___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeBodyGyroscopeMagnitude_mean___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeMagnitude-mean()” numeric 0 180 180 -0.57 0.4 -0.98 -0.95 -0.66 -0.22 0.42 ▇▁▁▂▃▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeMagnitude-std()” {#timeBodyGyroscopeMagnitude_std__ .tabset}

Distribution {#timeBodyGyroscopeMagnitude_std___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeBodyGyroscopeMagnitude_std___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeMagnitude-std()” numeric 0 180 180 -0.63 0.34 -0.98 -0.95 -0.74 -0.36 0.3 ▇▁▂▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeJerkMagnitude-mean()” {#timeBodyGyroscopeJerkMagnitude_mean__ .tabset}

Distribution {#timeBodyGyroscopeJerkMagnitude_mean___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeBodyGyroscopeJerkMagnitude_mean___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeJerkMagnitude-mean()” numeric 0 180 180 -0.74 0.28 -1 -0.99 -0.86 -0.51 0.088 ▇▁▂▂▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“timeBodyGyroscopeJerkMagnitude-std()” {#timeBodyGyroscopeJerkMagnitude_std__ .tabset}

Distribution {#timeBodyGyroscopeJerkMagnitude_std___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#timeBodyGyroscopeJerkMagnitude_std___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“timeBodyGyroscopeJerkMagnitude-std()” numeric 0 180 180 -0.76 0.27 -1 -0.98 -0.88 -0.58 0.25 ▇▂▃▂▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometer-mean()-X” {#_frequencyBodyAccelerometer_mean__X .tabset}

Distribution {#_frequencyBodyAccelerometer_mean___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometer_mean___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometer-mean()-X” numeric 0 180 180 -0.58 0.43 -1 -0.98 -0.77 -0.22 0.54 ▇▁▁▃▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometer-mean()-Y” {#_frequencyBodyAccelerometer_mean__Y .tabset}

Distribution {#_frequencyBodyAccelerometer_mean___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometer_mean___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometer-mean()-Y” numeric 0 180 180 -0.49 0.48 -0.99 -0.95 -0.59 -0.063 0.52 ▇▁▁▁▃▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometer-mean()-Z” {#_frequencyBodyAccelerometer_mean__Z .tabset}

Distribution {#_frequencyBodyAccelerometer_mean___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometer_mean___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometer-mean()-Z” numeric 0 180 180 -0.63 0.36 -0.99 -0.96 -0.72 -0.32 0.28 ▇▁▁▂▃▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometer-std()-X” {#_frequencyBodyAccelerometer_std__X .tabset}

Distribution {#_frequencyBodyAccelerometer_std___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometer_std___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometer-std()-X” numeric 0 180 180 -0.55 0.46 -1 -0.98 -0.75 -0.2 0.66 ▇▁▁▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometer-std()-Y” {#_frequencyBodyAccelerometer_std__Y .tabset}

Distribution {#_frequencyBodyAccelerometer_std___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometer_std___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometer-std()-Y” numeric 0 180 180 -0.48 0.47 -0.99 -0.94 -0.51 -0.079 0.56 ▇▁▁▁▃▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometer-std()-Z” {#_frequencyBodyAccelerometer_std__Z .tabset}

Distribution {#_frequencyBodyAccelerometer_std___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometer_std___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometer-std()-Z” numeric 0 180 180 -0.58 0.39 -0.99 -0.95 -0.64 -0.27 0.69 ▇▁▂▃▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerJerk-mean()-X” {#_frequencyBodyAccelerometerJerk_mean__X .tabset}

Distribution {#_frequencyBodyAccelerometerJerk_mean___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometerJerk_mean___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerJerk-mean()-X” numeric 0 180 180 -0.61 0.4 -0.99 -0.98 -0.81 -0.28 0.47 ▇▁▁▂▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerJerk-mean()-Y” {#_frequencyBodyAccelerometerJerk_mean__Y .tabset}

Distribution {#_frequencyBodyAccelerometerJerk_mean___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometerJerk_mean___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerJerk-mean()-Y” numeric 0 180 180 -0.59 0.41 -0.99 -0.97 -0.78 -0.2 0.28 ▇▁▁▂▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerJerk-mean()-Z” {#_frequencyBodyAccelerometerJerk_mean__Z .tabset}

Distribution {#_frequencyBodyAccelerometerJerk_mean___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometerJerk_mean___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerJerk-mean()-Z” numeric 0 180 180 -0.71 0.3 -0.99 -0.98 -0.87 -0.47 0.16 ▇▁▂▂▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerJerk-std()-X” {#_frequencyBodyAccelerometerJerk_std__X .tabset}

Distribution {#_frequencyBodyAccelerometerJerk_std___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometerJerk_std___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerJerk-std()-X” numeric 0 180 180 -0.61 0.4 -1 -0.98 -0.83 -0.25 0.48 ▇▁▁▂▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerJerk-std()-Y” {#_frequencyBodyAccelerometerJerk_std__Y .tabset}

Distribution {#_frequencyBodyAccelerometerJerk_std___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometerJerk_std___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerJerk-std()-Y” numeric 0 180 180 -0.57 0.43 -0.99 -0.97 -0.79 -0.17 0.35 ▇▁▁▂▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerJerk-std()-Z” {#_frequencyBodyAccelerometerJerk_std__Z .tabset}

Distribution {#_frequencyBodyAccelerometerJerk_std___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyAccelerometerJerk_std___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerJerk-std()-Z” numeric 0 180 180 -0.76 0.26 -0.99 -0.98 -0.9 -0.54 -0.0062 ▇▁▂▂▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscope-mean()-X” {#_frequencyBodyGyroscope_mean__X .tabset}

Distribution {#_frequencyBodyGyroscope_mean___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyGyroscope_mean___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscope-mean()-X” numeric 0 180 180 -0.64 0.35 -0.99 -0.97 -0.73 -0.34 0.47 ▇▁▂▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscope-mean()-Y” {#_frequencyBodyGyroscope_mean__Y .tabset}

Distribution {#_frequencyBodyGyroscope_mean___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyGyroscope_mean___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscope-mean()-Y” numeric 0 180 180 -0.68 0.33 -0.99 -0.97 -0.81 -0.45 0.33 ▇▁▃▂▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscope-mean()-Z” {#_frequencyBodyGyroscope_mean__Z .tabset}

Distribution {#_frequencyBodyGyroscope_mean___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyGyroscope_mean___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscope-mean()-Z” numeric 0 180 180 -0.6 0.38 -0.99 -0.96 -0.79 -0.26 0.49 ▇▁▁▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscope-std()-X” {#_frequencyBodyGyroscope_std__X .tabset}

Distribution {#_frequencyBodyGyroscope_std___X__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyGyroscope_std___X__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscope-std()-X” numeric 0 180 180 -0.71 0.27 -0.99 -0.98 -0.81 -0.48 0.2 ▇▁▂▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscope-std()-Y” {#_frequencyBodyGyroscope_std__Y .tabset}

Distribution {#_frequencyBodyGyroscope_std___Y__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyGyroscope_std___Y__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscope-std()-Y” numeric 0 180 180 -0.65 0.36 -0.99 -0.96 -0.8 -0.42 0.65 ▇▁▃▂▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscope-std()-Z” {#_frequencyBodyGyroscope_std__Z .tabset}

Distribution {#_frequencyBodyGyroscope_std___Z__distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#_frequencyBodyGyroscope_std___Z__summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscope-std()-Z” numeric 0 180 180 -0.66 0.34 -0.99 -0.96 -0.82 -0.39 0.52 ▇▁▃▃▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerMagnitude-mean()” {#frequencyBodyAccelerometerMagnitude_mean__ .tabset}

Distribution {#frequencyBodyAccelerometerMagnitude_mean___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#frequencyBodyAccelerometerMagnitude_mean___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerMagnitude-mean()” numeric 0 180 180 -0.54 0.45 -0.99 -0.96 -0.67 -0.16 0.59 ▇▁▁▃▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerMagnitude-std()” {#frequencyBodyAccelerometerMagnitude_std__ .tabset}

Distribution {#frequencyBodyAccelerometerMagnitude_std___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#frequencyBodyAccelerometerMagnitude_std___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerMagnitude-std()” numeric 0 180 180 -0.62 0.35 -0.99 -0.95 -0.65 -0.37 0.18 ▇▁▁▂▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerJerkMagnitude-mean()” {#frequencyBodyAccelerometerJerkMagnitude_mean__ .tabset}

Distribution {#frequencyBodyAccelerometerJerkMagnitude_mean___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#frequencyBodyAccelerometerJerkMagnitude_mean___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerJerkMagnitude-mean()” numeric 0 180 180 -0.58 0.43 -0.99 -0.98 -0.79 -0.19 0.54 ▇▁▁▂▂▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyAccelerometerJerkMagnitude-std()” {#frequencyBodyAccelerometerJerkMagnitude_std__ .tabset}

Distribution {#frequencyBodyAccelerometerJerkMagnitude_std___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#frequencyBodyAccelerometerJerkMagnitude_std___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyAccelerometerJerkMagnitude-std()” numeric 0 180 180 -0.6 0.41 -0.99 -0.98 -0.81 -0.27 0.32 ▇▁▁▂▁▂▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscopeMagnitude-mean()” {#frequencyBodyGyroscopeMagnitude_mean__ .tabset}

Distribution {#frequencyBodyGyroscopeMagnitude_mean___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#frequencyBodyGyroscopeMagnitude_mean___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscopeMagnitude-mean()” numeric 0 180 180 -0.67 0.32 -0.99 -0.96 -0.77 -0.41 0.2 ▇▁▂▂▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscopeMagnitude-std()” {#frequencyBodyGyroscopeMagnitude_std__ .tabset}

Distribution {#frequencyBodyGyroscopeMagnitude_std___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#frequencyBodyGyroscopeMagnitude_std___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscopeMagnitude-std()” numeric 0 180 180 -0.67 0.29 -0.98 -0.95 -0.77 -0.43 0.24 ▇▁▂▃▂▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscopeJerkMagnitude-mean()” {#frequencyBodyGyroscopeJerkMagnitude_mean__ .tabset}

Distribution {#frequencyBodyGyroscopeJerkMagnitude_mean___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#frequencyBodyGyroscopeJerkMagnitude_mean___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscopeJerkMagnitude-mean()” numeric 0 180 180 -0.76 0.26 -1 -0.98 -0.88 -0.58 0.15 ▇▂▃▂▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

“frequencyBodyGyroscopeJerkMagnitude-std()” {#frequencyBodyGyroscopeJerkMagnitude_std__ .tabset}

Distribution {#frequencyBodyGyroscopeJerkMagnitude_std___distribution}

show_missing_values <- FALSE
if (has_labels(item)) {
  missing_values <- item[is.na(haven::zap_missing(item))]
  attributes(missing_values) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.double(item)) {
    show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
  !is.null(item_info) &&
  (exists("type", item_info) && 
    any(stringr::str_detect(item_info$type, 
                            pattern = stringr::fixed("multiple"))))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
  
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
      new_height <- old_height
    }
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
  if (is.character(item_nomiss)) {
      char_count <- stringr::str_count(item_nomiss)
      attributes(char_count)$label <- item_label
      plot_labelled(char_count, 
                    item_name, wrap_at, FALSE, trans = "log1p", "characters")
  } else {
      cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
  }
}

knitr::opts_chunk$set(fig.height = old_height)

0 missing values.

Summary statistics {#frequencyBodyGyroscopeJerkMagnitude_std___summary}

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
name data_type missing complete n mean sd p0 p25 p50 p75 p100 hist
“frequencyBodyGyroscopeJerkMagnitude-std()” numeric 0 180 180 -0.77 0.25 -1 -0.98 -0.89 -0.61 0.29 ▇▂▃▂▁▁▁▁
if (show_missing_values) {
  plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}
missingness_report

Missingness report

if (length(md_pattern)) {
  if (knitr::is_html_output()) {
    rmarkdown::paged_table(md_pattern, options = list(rows.print = 10))
  } else {
    knitr::kable(md_pattern)
  }
}
items

Codebook table

export_table(metadata_table)
jsonld

JSON-LD metadata The following JSON-LD can be found by search engines, if you share this codebook publicly on the web.

{
  "name": "codebook_data",
  "datePublished": "2020-08-19",
  "description": "The dataset has N=180 rows and 68 columns.\n180 rows have no missing values on any column.\n\n\n## Table of variables\nThis table contains variable names, labels, their central tendencies and other attributes.\n\n|name                                             |data_type |missing |complete |n   |empty |n_unique |min |max |mean   |sd     |p0     |p25     |p50     |p75    |p100    |hist     |\n|:------------------------------------------------|:---------|:-------|:--------|:---|:-----|:--------|:---|:---|:------|:------|:------|:-------|:-------|:------|:-------|:--------|\n|\"subject\"                                        |integer   |0       |180      |180 |NA    |NA       |NA  |NA  |15.5   |8.68   |1      |8       |15.5    |23     |30      |▇▇▆▇▇▆▇▇ |\n|\"activity\"                                       |character |0       |180      |180 |0     |6        |8   |20  |NA     |NA     |NA     |NA      |NA      |NA     |NA      |NA       |\n|\"timeBodyAccelerometer-mean()-X\"                 |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |0.27   |0.012  |0.22   |0.27    |0.28    |0.28   |0.3     |▁▁▁▁▂▇▂▁ |\n|\"timeBodyAccelerometer-mean()-Y\"                 |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.018 |0.0058 |-0.041 |-0.02   |-0.017  |-0.015 |-0.0013 |▁▁▂▂▇▃▁▁ |\n|\"timeBodyAccelerometer-mean()-Z\"                 |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.11  |0.0096 |-0.15  |-0.11   |-0.11   |-0.1   |-0.075  |▁▁▁▂▇▃▁▁ |\n|\"timeBodyAccelerometer-std()-X\"                  |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.56  |0.45   |-1     |-0.98   |-0.75   |-0.2   |0.63    |▇▁▁▃▂▂▁▁ |\n|\"timeBodyAccelerometer-std()-Y\"                  |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.46  |0.5    |-0.99  |-0.94   |-0.51   |-0.031 |0.62    |▇▁▁▁▃▂▁▁ |\n|\"timeBodyAccelerometer-std()-Z\"                  |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.58  |0.4    |-0.99  |-0.95   |-0.65   |-0.23  |0.61    |▇▁▂▃▂▁▁▁ |\n|\"timeGravityAccelerometer-mean()-X\"              |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |0.7    |0.49   |-0.68  |0.84    |0.92    |0.94   |0.97    |▁▁▁▁▁▁▁▇ |\n|\"timeGravityAccelerometer-mean()-Y\"              |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.016 |0.35   |-0.48  |-0.23   |-0.13   |0.088  |0.96    |▂▇▅▂▁▁▁▁ |\n|\"timeGravityAccelerometer-mean()-Z\"              |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |0.074  |0.29   |-0.5   |-0.12   |0.024   |0.15   |0.96    |▁▅▇▆▁▁▁▁ |\n|\"timeGravityAccelerometer-std()-X\"               |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.96  |0.025  |-1     |-0.98   |-0.97   |-0.95  |-0.83   |▇▆▅▂▁▁▁▁ |\n|\"timeGravityAccelerometer-std()-Y\"               |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.95  |0.033  |-0.99  |-0.97   |-0.96   |-0.94  |-0.64   |▇▅▁▁▁▁▁▁ |\n|\"timeGravityAccelerometer-std()-Z\"               |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.94  |0.04   |-0.99  |-0.96   |-0.95   |-0.92  |-0.61   |▇▆▂▁▁▁▁▁ |\n|\"timeBodyAccelerometerJerk-mean()-X\"             |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |0.079  |0.013  |0.043  |0.074   |0.076   |0.083  |0.13    |▁▁▇▇▂▁▁▁ |\n|\"timeBodyAccelerometerJerk-mean()-Y\"             |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |0.0076 |0.014  |-0.039 |0.00047 |0.0095  |0.013  |0.057   |▁▁▂▆▇▂▁▁ |\n|\"timeBodyAccelerometerJerk-mean()-Z\"             |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.005 |0.013  |-0.067 |-0.011  |-0.0039 |0.002  |0.038   |▁▁▁▁▇▆▁▁ |\n|\"timeBodyAccelerometerJerk-std()-X\"              |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.59  |0.42   |-0.99  |-0.98   |-0.81   |-0.22  |0.54    |▇▁▁▂▂▂▁▁ |\n|\"timeBodyAccelerometerJerk-std()-Y\"              |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.57  |0.43   |-0.99  |-0.97   |-0.78   |-0.15  |0.36    |▇▁▁▂▂▂▁▁ |\n|\"timeBodyAccelerometerJerk-std()-Z\"              |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.74  |0.28   |-0.99  |-0.98   |-0.88   |-0.51  |0.031   |▇▁▂▂▂▁▁▁ |\n|\"timeBodyGyroscope-mean()-X\"                     |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.032 |0.054  |-0.21  |-0.047  |-0.029  |-0.017 |0.19    |▁▁▂▇▁▁▁▁ |\n|\"timeBodyGyroscope-mean()-Y\"                     |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.074 |0.036  |-0.2   |-0.09   |-0.073  |-0.061 |0.027   |▁▁▁▃▇▂▁▁ |\n|\"timeBodyGyroscope-mean()-Z\"                     |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |0.087  |0.036  |-0.072 |0.075   |0.085   |0.1    |0.18    |▁▁▁▁▇▇▂▁ |\n|\"timeBodyGyroscope-std()-X\"]                     |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.69  |0.29   |-0.99  |-0.97   |-0.79   |-0.44  |0.27    |▇▁▂▃▂▁▁▁ |\n|\"timeBodyGyroscope-std()-Y\"                      |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.65  |0.35   |-0.99  |-0.96   |-0.8    |-0.42  |0.48    |▇▁▃▂▁▁▁▁ |\n|\"timeBodyGyroscope-std()-Z\"                      |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.62  |0.37   |-0.99  |-0.96   |-0.8    |-0.31  |0.56    |▇▁▂▃▂▁▁▁ |\n|\"timeBodyGyroscopeJerk-mean()-X\"                 |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.096 |0.023  |-0.16  |-0.1    |-0.099  |-0.091 |-0.022  |▁▁▁▇▁▁▁▁ |\n|\"timeBodyGyroscopeJerk-mean()-Y\"                 |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.043 |0.0095 |-0.077 |-0.046  |-0.041  |-0.038 |-0.013  |▁▁▁▂▇▂▁▁ |\n|\"timeBodyGyroscopeJerk-mean()-Z\"                 |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.055 |0.012  |-0.092 |-0.062  |-0.053  |-0.049 |-0.0069 |▁▁▃▇▃▁▁▁ |\n|\"timeBodyGyroscopeJerk-std()-X\"                  |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.7   |0.3    |-1     |-0.98   |-0.84   |-0.46  |0.18    |▇▁▂▃▂▁▁▁ |\n|\"timeBodyGyroscopeJerk-std()-Y\"                  |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.76  |0.27   |-1     |-0.98   |-0.89   |-0.59  |0.3     |▇▂▂▂▁▁▁▁ |\n|\"timeBodyGyroscopeJerk-std()-Z\"                  |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.71  |0.3    |-1     |-0.98   |-0.86   |-0.47  |0.19    |▇▁▂▂▂▁▁▁ |\n|\"timeBodyAccelerometerMagnitude-mean()\"          |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.5   |0.47   |-0.99  |-0.96   |-0.48   |-0.092 |0.64    |▇▁▁▂▃▂▁▁ |\n|\"timeBodyAccelerometerMagnitude-std()\"           |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.54  |0.43   |-0.99  |-0.94   |-0.61   |-0.21  |0.43    |▇▁▁▂▂▁▂▁ |\n|\"timeGravityAccelerometerMagnitude-mean()\"       |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.5   |0.47   |-0.99  |-0.96   |-0.48   |-0.092 |0.64    |▇▁▁▂▃▂▁▁ |\n|\"timeGravityAccelerometerMagnitude-std()\"        |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.54  |0.43   |-0.99  |-0.94   |-0.61   |-0.21  |0.43    |▇▁▁▂▂▁▂▁ |\n|\"timeBodyAccelerometerJerkMagnitude-mean()\"      |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.61  |0.4    |-0.99  |-0.98   |-0.82   |-0.25  |0.43    |▇▁▁▂▂▁▁▁ |\n|\"timeBodyAccelerometerJerkMagnitude-std()\"       |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.58  |0.42   |-0.99  |-0.98   |-0.8    |-0.22  |0.45    |▇▁▁▂▂▂▁▁ |\n|\"timeBodyGyroscopeMagnitude-mean()\"              |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.57  |0.4    |-0.98  |-0.95   |-0.66   |-0.22  |0.42    |▇▁▁▂▃▁▁▁ |\n|\"timeBodyGyroscopeMagnitude-std()\"               |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.63  |0.34   |-0.98  |-0.95   |-0.74   |-0.36  |0.3     |▇▁▂▃▂▁▁▁ |\n|\"timeBodyGyroscopeJerkMagnitude-mean()\"          |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.74  |0.28   |-1     |-0.99   |-0.86   |-0.51  |0.088   |▇▁▂▂▂▁▁▁ |\n|\"timeBodyGyroscopeJerkMagnitude-std()\"           |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.76  |0.27   |-1     |-0.98   |-0.88   |-0.58  |0.25    |▇▂▃▂▁▁▁▁ |\n|\"frequencyBodyAccelerometer-mean()-X\"            |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.58  |0.43   |-1     |-0.98   |-0.77   |-0.22  |0.54    |▇▁▁▃▂▂▁▁ |\n|\"frequencyBodyAccelerometer-mean()-Y\"            |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.49  |0.48   |-0.99  |-0.95   |-0.59   |-0.063 |0.52    |▇▁▁▁▃▂▁▁ |\n|\"frequencyBodyAccelerometer-mean()-Z\"            |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.63  |0.36   |-0.99  |-0.96   |-0.72   |-0.32  |0.28    |▇▁▁▂▃▁▁▁ |\n|\"frequencyBodyAccelerometer-std()-X\"             |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.55  |0.46   |-1     |-0.98   |-0.75   |-0.2   |0.66    |▇▁▁▃▂▁▁▁ |\n|\"frequencyBodyAccelerometer-std()-Y\"             |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.48  |0.47   |-0.99  |-0.94   |-0.51   |-0.079 |0.56    |▇▁▁▁▃▂▁▁ |\n|\"frequencyBodyAccelerometer-std()-Z\"             |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.58  |0.39   |-0.99  |-0.95   |-0.64   |-0.27  |0.69    |▇▁▂▃▁▁▁▁ |\n|\"frequencyBodyAccelerometerJerk-mean()-X\"        |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.61  |0.4    |-0.99  |-0.98   |-0.81   |-0.28  |0.47    |▇▁▁▂▂▁▁▁ |\n|\"frequencyBodyAccelerometerJerk-mean()-Y\"        |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.59  |0.41   |-0.99  |-0.97   |-0.78   |-0.2   |0.28    |▇▁▁▂▂▂▁▁ |\n|\"frequencyBodyAccelerometerJerk-mean()-Z\"        |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.71  |0.3    |-0.99  |-0.98   |-0.87   |-0.47  |0.16    |▇▁▂▂▂▁▁▁ |\n|\"frequencyBodyAccelerometerJerk-std()-X\"         |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.61  |0.4    |-1     |-0.98   |-0.83   |-0.25  |0.48    |▇▁▁▂▂▂▁▁ |\n|\"frequencyBodyAccelerometerJerk-std()-Y\"         |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.57  |0.43   |-0.99  |-0.97   |-0.79   |-0.17  |0.35    |▇▁▁▂▂▂▁▁ |\n|\"frequencyBodyAccelerometerJerk-std()-Z\"         |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.76  |0.26   |-0.99  |-0.98   |-0.9    |-0.54  |-0.0062 |▇▁▂▂▂▁▁▁ |\n|\"frequencyBodyGyroscope-mean()-X\"                |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.64  |0.35   |-0.99  |-0.97   |-0.73   |-0.34  |0.47    |▇▁▂▃▂▁▁▁ |\n|\"frequencyBodyGyroscope-mean()-Y\"                |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.68  |0.33   |-0.99  |-0.97   |-0.81   |-0.45  |0.33    |▇▁▃▂▁▁▁▁ |\n|\"frequencyBodyGyroscope-mean()-Z\"                |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.6   |0.38   |-0.99  |-0.96   |-0.79   |-0.26  |0.49    |▇▁▁▃▂▁▁▁ |\n|\"frequencyBodyGyroscope-std()-X\"                 |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.71  |0.27   |-0.99  |-0.98   |-0.81   |-0.48  |0.2     |▇▁▂▃▂▁▁▁ |\n|\"frequencyBodyGyroscope-std()-Y\"                 |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.65  |0.36   |-0.99  |-0.96   |-0.8    |-0.42  |0.65    |▇▁▃▂▁▁▁▁ |\n|\"frequencyBodyGyroscope-std()-Z\"                 |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.66  |0.34   |-0.99  |-0.96   |-0.82   |-0.39  |0.52    |▇▁▃▃▁▁▁▁ |\n|\"frequencyBodyAccelerometerMagnitude-mean()\"     |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.54  |0.45   |-0.99  |-0.96   |-0.67   |-0.16  |0.59    |▇▁▁▃▂▂▁▁ |\n|\"frequencyBodyAccelerometerMagnitude-std()\"      |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.62  |0.35   |-0.99  |-0.95   |-0.65   |-0.37  |0.18    |▇▁▁▂▂▁▁▁ |\n|\"frequencyBodyAccelerometerJerkMagnitude-mean()\" |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.58  |0.43   |-0.99  |-0.98   |-0.79   |-0.19  |0.54    |▇▁▁▂▂▂▁▁ |\n|\"frequencyBodyAccelerometerJerkMagnitude-std()\"  |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.6   |0.41   |-0.99  |-0.98   |-0.81   |-0.27  |0.32    |▇▁▁▂▁▂▁▁ |\n|\"frequencyBodyGyroscopeMagnitude-mean()\"         |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.67  |0.32   |-0.99  |-0.96   |-0.77   |-0.41  |0.2     |▇▁▂▂▂▁▁▁ |\n|\"frequencyBodyGyroscopeMagnitude-std()\"          |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.67  |0.29   |-0.98  |-0.95   |-0.77   |-0.43  |0.24    |▇▁▂▃▂▁▁▁ |\n|\"frequencyBodyGyroscopeJerkMagnitude-mean()\"     |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.76  |0.26   |-1     |-0.98   |-0.88   |-0.58  |0.15    |▇▂▃▂▁▁▁▁ |\n|\"frequencyBodyGyroscopeJerkMagnitude-std()\"      |numeric   |0       |180      |180 |NA    |NA       |NA  |NA  |-0.77  |0.25   |-1     |-0.98   |-0.89   |-0.61  |0.29    |▇▂▃▂▁▁▁▁ |\n\n### Note\nThis dataset was automatically described using the [codebook R package](https://rubenarslan.github.io/codebook/) (version 0.8.1).",
  "keywords": ["\"subject\"", "\"activity\"", "\"timeBodyAccelerometer-mean()-X\"", "\"timeBodyAccelerometer-mean()-Y\"", "\"timeBodyAccelerometer-mean()-Z\"", "\"timeBodyAccelerometer-std()-X\"", "\"timeBodyAccelerometer-std()-Y\"", "\"timeBodyAccelerometer-std()-Z\"", "\"timeGravityAccelerometer-mean()-X\"", "\"timeGravityAccelerometer-mean()-Y\"", "\"timeGravityAccelerometer-mean()-Z\"", "\"timeGravityAccelerometer-std()-X\"", "\"timeGravityAccelerometer-std()-Y\"", "\"timeGravityAccelerometer-std()-Z\"", "\"timeBodyAccelerometerJerk-mean()-X\"", "\"timeBodyAccelerometerJerk-mean()-Y\"", "\"timeBodyAccelerometerJerk-mean()-Z\"", "\"timeBodyAccelerometerJerk-std()-X\"", "\"timeBodyAccelerometerJerk-std()-Y\"", "\"timeBodyAccelerometerJerk-std()-Z\"", "\"timeBodyGyroscope-mean()-X\"", "\"timeBodyGyroscope-mean()-Y\"", "\"timeBodyGyroscope-mean()-Z\"", "\"timeBodyGyroscope-std()-X\"]", "\"timeBodyGyroscope-std()-Y\"", "\"timeBodyGyroscope-std()-Z\"", "\"timeBodyGyroscopeJerk-mean()-X\"", "\"timeBodyGyroscopeJerk-mean()-Y\"", "\"timeBodyGyroscopeJerk-mean()-Z\"", "\"timeBodyGyroscopeJerk-std()-X\"", "\"timeBodyGyroscopeJerk-std()-Y\"", "\"timeBodyGyroscopeJerk-std()-Z\"", "\"timeBodyAccelerometerMagnitude-mean()\"", "\"timeBodyAccelerometerMagnitude-std()\"", "\"timeGravityAccelerometerMagnitude-mean()\"", "\"timeGravityAccelerometerMagnitude-std()\"", "\"timeBodyAccelerometerJerkMagnitude-mean()\"", "\"timeBodyAccelerometerJerkMagnitude-std()\"", "\"timeBodyGyroscopeMagnitude-mean()\"", "\"timeBodyGyroscopeMagnitude-std()\"", "\"timeBodyGyroscopeJerkMagnitude-mean()\"", "\"timeBodyGyroscopeJerkMagnitude-std()\"", "\"frequencyBodyAccelerometer-mean()-X\"", "\"frequencyBodyAccelerometer-mean()-Y\"", "\"frequencyBodyAccelerometer-mean()-Z\"", "\"frequencyBodyAccelerometer-std()-X\"", "\"frequencyBodyAccelerometer-std()-Y\"", "\"frequencyBodyAccelerometer-std()-Z\"", "\"frequencyBodyAccelerometerJerk-mean()-X\"", "\"frequencyBodyAccelerometerJerk-mean()-Y\"", "\"frequencyBodyAccelerometerJerk-mean()-Z\"", "\"frequencyBodyAccelerometerJerk-std()-X\"", "\"frequencyBodyAccelerometerJerk-std()-Y\"", "\"frequencyBodyAccelerometerJerk-std()-Z\"", "\"frequencyBodyGyroscope-mean()-X\"", "\"frequencyBodyGyroscope-mean()-Y\"", "\"frequencyBodyGyroscope-mean()-Z\"", "\"frequencyBodyGyroscope-std()-X\"", "\"frequencyBodyGyroscope-std()-Y\"", "\"frequencyBodyGyroscope-std()-Z\"", "\"frequencyBodyAccelerometerMagnitude-mean()\"", "\"frequencyBodyAccelerometerMagnitude-std()\"", "\"frequencyBodyAccelerometerJerkMagnitude-mean()\"", "\"frequencyBodyAccelerometerJerkMagnitude-std()\"", "\"frequencyBodyGyroscopeMagnitude-mean()\"", "\"frequencyBodyGyroscopeMagnitude-std()\"", "\"frequencyBodyGyroscopeJerkMagnitude-mean()\"", "\"frequencyBodyGyroscopeJerkMagnitude-std()\""],
  "@context": "http://schema.org/",
  "@type": "Dataset",
  "variableMeasured": [
    {
      "name": "\"subject\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"activity\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometer-mean()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometer-mean()-Y\"",
      "@type": "propertyValue"
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    {
      "name": "\"timeBodyAccelerometer-mean()-Z\"",
      "@type": "propertyValue"
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    {
      "name": "\"timeBodyAccelerometer-std()-X\"",
      "@type": "propertyValue"
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    {
      "name": "\"timeBodyAccelerometer-std()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometer-std()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeGravityAccelerometer-mean()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeGravityAccelerometer-mean()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeGravityAccelerometer-mean()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeGravityAccelerometer-std()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeGravityAccelerometer-std()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeGravityAccelerometer-std()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerJerk-mean()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerJerk-mean()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerJerk-mean()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerJerk-std()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerJerk-std()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerJerk-std()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscope-mean()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscope-mean()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscope-mean()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscope-std()-X\"]",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscope-std()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscope-std()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeJerk-mean()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeJerk-mean()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeJerk-mean()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeJerk-std()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeJerk-std()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeJerk-std()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerMagnitude-mean()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerMagnitude-std()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeGravityAccelerometerMagnitude-mean()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeGravityAccelerometerMagnitude-std()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerJerkMagnitude-mean()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyAccelerometerJerkMagnitude-std()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeMagnitude-mean()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeMagnitude-std()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeJerkMagnitude-mean()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"timeBodyGyroscopeJerkMagnitude-std()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometer-mean()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometer-mean()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometer-mean()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometer-std()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometer-std()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometer-std()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerJerk-mean()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerJerk-mean()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerJerk-mean()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerJerk-std()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerJerk-std()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerJerk-std()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscope-mean()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscope-mean()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscope-mean()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscope-std()-X\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscope-std()-Y\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscope-std()-Z\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerMagnitude-mean()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerMagnitude-std()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerJerkMagnitude-mean()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyAccelerometerJerkMagnitude-std()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscopeMagnitude-mean()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscopeMagnitude-std()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscopeJerkMagnitude-mean()\"",
      "@type": "propertyValue"
    },
    {
      "name": "\"frequencyBodyGyroscopeJerkMagnitude-std()\"",
      "@type": "propertyValue"
    }
  ]
}`